species:   Clros
pid:       PID1846
parent:    cro-mir-36
paralog:   
locus:     CADEHS020000106.2:298129-298217
matures:   ['UCAAACACAAUUAGCGGUC', 'CCGCUAAUUGUGUUUGAGA']
srr:       ERR5960111
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram CADEHS020000106.2:298129-298217

429 out of bounds
723 alignments
271 proper strand
257 stranded perfect matches

*******************                                                ********************* 
UCAAACACAAUUAGCGGUCUAUACCCAAACCUUCCACUCUGGAAAAUUUUUGGAAAAGUUGGGUAUAGACCGCUAAUUGUGUUUGAGAU
((((((((((((((((((((((((((((...(((((..............)))))...))))))))))))))))))))))))))))...
UCAAACACAAUUAGCGGUC---------------------------------------------------------------------- l=19 a=135 c
---------------------------------------------------------------------CCGCUAAUUGUGUUUGAGA- l=19 a=2 c*
UCAAACACAAUUAGCGGUC---------------------------------------------------------------------- l=19 a=135 ma
---------------------------------------------------------------------CCGCUAAUUGUGUUUGAGA- l=19 a=2 ma*

UCAAACACAAUUAGCGG------------------------------------------------------------------------ l=17 a=2 
UCAAACACAAUUAGCGGU----------------------------------------------------------------------- l=18 a=10 
UCAAACACAAUUAGCGGUC---------------------------------------------------------------------- l=19 a=135 (c,ma)
UCAAACACAAUUAGCuGUC---------------------------------------------------------------------- l=19 a=1 
UCAAACACAAaUAGCGGUC---------------------------------------------------------------------- l=19 a=1 
UCAAACACAAUUAGCGGUCU--------------------------------------------------------------------- l=20 a=73 
UCAAACACAAUUAGCGGUCa--------------------------------------------------------------------- l=20 a=5 
UCAAACACAAUUAGCGGUCg--------------------------------------------------------------------- l=20 a=1 
UCAAACACAAUUAGCGGUCUA-------------------------------------------------------------------- l=21 a=16 
UCAAACACAAUUAGCGGUCcA-------------------------------------------------------------------- l=21 a=1 
UCAAACACAAUUAGCGGUCaA-------------------------------------------------------------------- l=21 a=1 
UCAAACACAAUUAGCGGUCgA-------------------------------------------------------------------- l=21 a=1 
UCAAACACAAUUAGCGGUCUAgA------------------------------------------------------------------ l=23 a=1 
UCAAACACAAUUAGCGGUCUAUA------------------------------------------------------------------ l=23 a=1 
--AAACACAAUUAGCGGUC---------------------------------------------------------------------- l=17 a=2 
--AAACACAAUUAGCGGUCUAUA------------------------------------------------------------------ l=21 a=2 
----ACACAAUUAGCGGUCU--------------------------------------------------------------------- l=16 a=2 
-----------------------------------------------------------------UAGACCGCUAAUUGUGUUUG---- l=20 a=1 
-----------------------------------------------------------------UAGACCGCUAAUUGUGUUUGA--- l=21 a=4 
-----------------------------------------------------------------UAGACCGCUAAUUGUGUUUGc--- l=21 a=1 
-----------------------------------------------------------------UAGACCGCUAAUUGUGUUUGAG-- l=22 a=5 
-----------------------------------------------------------------UAGACCGCUAAUUGUGUUUGAGA- l=23 a=1 
-------------------------------------------------------------------GACCGCUAAUUGUGUUUGAGAc l=22 a=1 
---------------------------------------------------------------------CCGCUAAUUGUGUUUGAGA- l=19 a=2 (c*,ma*)
----------------------------------------------------------------------------UUGUGUUUGAGA- l=12 a=1 

mb-01111
ax-1111001
ku-11
ss-101010011111
fn-101
